Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015793820.1_cds_XP_016435648.1_3070
CDS Infomation

[gene=LOC107761868] [db_xref=GeneID:107761868] [protein=LOW QUALITY PROTEIN: F-box protein At1g78280-like] [transl_except=(pos:1528..1530,aa:Other),(pos:1546..1548,aa:Other)] [protein_id=XP_016435648.1] [location=complement(join(3966..4104,4631..4793,5604..5817,5956..6022,7173..7427,7553..7881,7966..8046,12993..13115,13319..13834,13946..14045,26828..27027,27107..27304,28205..28347,28431..28486,28580..28690,29568..29794))] [gbkey=CDS]
Sequence

ATGCTGCAAATCATCTTCTCAATTCAAACATTAGAAAAACGAAAAATGGAGGTAGAAGAA
AATCCTCAATTGCAAACGCAACCTGAGTCATCGCCAATGGAAGTTGAACAGATAGATCGG
AGGCCGGCGGCTCTCGGAGACCTCCGAATTCTTCCCGACGAAGTTTTGTGCGCTATACTG
ACTTTTCTCACTCCTCACGATGTCGCTCGCCTTTCCTGTGTTAGCAGTGTGATGTATATT
CTATGCAATGAGGAGCCCCTATGGATGAGCATATGCCTTGATATTGCTAATCGTCAGCTT
CAATATAAAGGCTCCTGGAAAAGAACAGCCCTGGACCAATTGAATGTGACTTTTGAAAAC
AATGAATCCTGCCGGAAGCCGCTACACTTTGACGGATTCAATTCTTTGTTCCTGTATCGT
AGATTATACCGGTGCTATACATCATTGAATGGATTTTATTATGATACCGGAAACGTGGAA
AGAGCGAAGAACCTTTCTATAGAAGAGTTTCATGATAAGTATGATGGACAGAAACCGGTA
CTAATTGCTGGATTGGCTGACACTTGGCCTGCAAGCACTACATGGACTACGGAGGAGCTT
TTGAAGAAATATGAAGATACAGCATTTAAATTATCTCAAAGAAGTCGTCACAAGATTAAG
ATGAAACTTAAGGACTATGTGTCTTACATCAAACTTCAGCATGACGAGGATCCTCTTTAC
ATTTTCGATGAGAAGTTTGGGGAAACTGCACCAGAATTGTTGAAGGATTACAGTGTTCCA
AATATATTCAAAGAAGACTTCTTTGATGTGCTGGACAGGGATCAACGACCTCCTTTCAGG
TGGCTCATTATGGGACCGGAGAGGTCTGGTGCCTCTTGGCATGTTGATCCTGCCCTAACT
AGTGCGTGGAATACACTTTTATGTGGTCGTAAAAGGTGGGCACTTTATCCTCCTGGGAGA
GTACCTTTAGGAGTGACAGTTCATGTAAATGAAGAAGATGGTGATGTCAGTATTGACACT
CCATCATCTTTGCAGTGGTGGCTGGACTTCTACCCTCTTCTCGCTGAGGAGGACAAGCCG
ATAGAATGTACTCAACTGCCTGGGGAAACAATATTTGTCCCTAGCGGATGGTGGCATTGC
GTGCTAAATTTGGAGACTACTGTTGCTGTGACACAGAATTTTGTGAACACCAAGAACTTT
GAATTTGTGTGTCTGGATATGGCTCCTGGTTATAGGCATAAAGGAGTTTGCCGTGCTGGG
CTTCTTGCTTTGGATGATATCAGTATTGAGGATGTCAGAAAAAATGTGTTGTCCTTGGAC
AACAGTTTGAGCTGCTCTGACCTGTCAAGGAAAGAGAAGAGGATTAGAGTTGACCAACCT
GCTAAAGGTTCAGAAAATGGAAGTACTATAGATGGNCAATATTACTATTCTAAGTATACT
AGAAGCTTTCGTGGAAAAAGTCAATTGTGGCTAGGGAATAGAAAATTATCTTTATATGTC
TCTCCGCTTGTTATTTGTATTGGACCATGAAATAAGATACTAATTTGAAGAGGAGCCTGT
CTGGCGCTGAATGCTGATAGATGGTACACATATGTGGCAGAAATTTGTACCTCCCATGGG
TTGCCGTTGCCAACTGATGATGAGAGGCTTCCTGTTGGAACAGGCAGCAATCCAGTTTAT
CTAGCTGGGGACAATGTTATAAAAATATTTGTTGAAGAGGGATTAGAAGCTTGCCTTCAT
TCTTTGGGCACCGAGCTTGAGTTTTACAGTCTACTCCAGAAAATAAACTCCCCTCTGAAG
AATCACATTCCTAATGTTTTGGCCAGTGGGATTCTTTATATTGAAAATGGATTGTATAAA
GTTCAGCATTGGGATTGCAAAGGAGTTCCGGAGGTGGTTGCTAACATTACTCCCCTTGTG
GAACTTGAGCAAGTTGATTATCCATTTGGTCTTTGGAGTAAAAGGCAGTTTGATTTTAAA
AAAGCTGGGATGTCATTACCCGAACTAGTAAGCGCTGGCAGCGGCTCAACAATATGGCCA
TATGTCATAACACAGAGATGCAAAGGAAAAATATATGCTCAAATAAGAGATTCCATCTCA
TGGGAAGATACTGTAAATTTGGCCTCCTTCCTGGGAGAACAAATGCGCAACCTTCATCTT
GTGCCATGCCCAGCTTTGAATGATTCAATATATTCGGAAGCCCAGCAGAAAGTACTCCTC
AATGCTAATGGGTATCTGGAGGATGATGAGGGCAAGATTTGTGCTCTTGGAGAGTGGAAT
TTGTTCCTGAGAACTCTGAACAGGAGAAAGAAGGATGTTTGTAACCGCTTGACCAAATGG
GGTGATCCGATTCCTGGAGAACTGATTGAGAAAGTTGAGGAATACATCCCTGATGACCTT
GGAAAGGTTGACATGGGATCCAGATCTTGTACCTGGATACACTCTGATGTAATGGATGAC
AATATCCACATGGAACCATGTTCCGTTGCTTCTCGCTCTGCAGGGACTATTGATGATCCT
GAGTTGATTGACAATGTTTATGCTAATGGATCTGATTTGGGTGAGCCTAGACATGCATGG
CGTCCTACTCATATACTTGATTTCAGTGATCTTTCAGTTGGGGACCCAATTTCTGACTTA
ATCCCGATATACCTGGATGTCTTTAGAGGAGATCCACATTTACTGAAGCAGTTTTTGGAT
AGCTATAAACTTCCATTTGTTAAAAGAGGACTTAATGCATCAGCCGAAAGCAACAGATTT
CAGAGACTTTCTTACCGAGCCATGTGCTACTGTATTTTGCATGATGAAAATGTTCTGGGA
GTTATCTTCGGTACTTGGAAGGAACTAAGGAAGGCAAAATCATGGGAAGAAGTAGAGGAA
GCTGTATGGGGAGATCTCAACAGTTATACAGGCTCCTGTTGA

Peptide Sequence

PEP ID

XP_016435648.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: F-box protein At1g78280-like [Nicotiana tabacum]
Sequence

MLQIIFSIQTLEKRKMEVEENPQLQTQPESSPMEVEQIDRRPAALGDLRILPDEVLCAIL
TFLTPHDVARLSCVSSVMYILCNEEPLWMSICLDIANRQLQYKGSWKRTALDQLNVTFEN
NESCRKPLHFDGFNSLFLYRRLYRCYTSLNGFYYDTGNVERAKNLSIEEFHDKYDGQKPV
LIAGLADTWPASTTWTTEELLKKYEDTAFKLSQRSRHKIKMKLKDYVSYIKLQHDEDPLY
IFDEKFGETAPELLKDYSVPNIFKEDFFDVLDRDQRPPFRWLIMGPERSGASWHVDPALT
SAWNTLLCGRKRWALYPPGRVPLGVTVHVNEEDGDVSIDTPSSLQWWLDFYPLLAEEDKP
IECTQLPGETIFVPSGWWHCVLNLETTVAVTQNFVNTKNFEFVCLDMAPGYRHKGVCRAG
LLALDDISIEDVRKNVLSLDNSLSCSDLSRKEKRIRVDQPAKGSENGSTIDGQYYYSKYT
RSFRGKSQLWLGNRKLSLYVSPLVICIGPXNKILIXRGACLALNADRWYTYVAEICTSHG
LPLPTDDERLPVGTGSNPVYLAGDNVIKIFVEEGLEACLHSLGTELEFYSLLQKINSPLK
NHIPNVLASGILYIENGLYKVQHWDCKGVPEVVANITPLVELEQVDYPFGLWSKRQFDFK
KAGMSLPELVSAGSGSTIWPYVITQRCKGKIYAQIRDSISWEDTVNLASFLGEQMRNLHL
VPCPALNDSIYSEAQQKVLLNANGYLEDDEGKICALGEWNLFLRTLNRRKKDVCNRLTKW
GDPIPGELIEKVEEYIPDDLGKVDMGSRSCTWIHSDVMDDNIHMEPCSVASRSAGTIDDP
ELIDNVYANGSDLGEPRHAWRPTHILDFSDLSVGDPISDLIPIYLDVFRGDPHLLKQFLD
SYKLPFVKRGLNASAESNRFQRLSYRAMCYCILHDENVLGVIFGTWKELRKAKSWEEVEE
AVWGDLNSYTGSC

Transcript Sequence

Gene sequence data has not been registered.